CTA transcript defaults: complete comparison
The 602 released CTAs contain 646 gene loci. A MANE-first comparison changes the selected sequence set for 53 proteins: 52 replace a longest-only choice and 1 loses an additional tied sequence.
Read the findings and selection rule. All proteins · Every locus · Every translated transcript, including alternatives · Full JSON · Reproduction manifest
This comparison previews a new choice of representative. It does not change the released CTA list or sequence permissions.
Transcript support
Best numeric support among transcripts encoding the selected protein sequence, pooled across member loci. A strong value at one member does not establish support at every other member; use the transcript inventory for locus-specific review. Prior-version annotations remain verbatim in that inventory. Missing and NA are separate.
| Support | Current proteins | Proposed proteins |
|---|---|---|
| 1: supported by a nonsuspect mRNA | 313 | 329 |
| 2: suspect mRNA or multiple ESTs | 44 | 39 |
| 3: single EST | 20 | 21 |
| 4: suspect EST | 4 | 5 |
| 5: no single transcript supports the model | 70 | 64 |
| NA: not assessed | 121 | 122 |
| Not supplied | 30 | 22 |
Definitions: GENCODE GTF documentation. TSL measures transcript-alignment support, not protein detection. NA is not a failed assay.